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Short description:
Please summarise the application in a few sentences. Avoid links here. Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Sequencing,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
k-mer counting
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Sanger
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
University of Maryland
Figaro is a software tool for identifying and removing the vector from raw DNA sequence data without prior knowledge of the vector sequence. By statistically modeling short oligonucleotide frequencies within a set of reads, Figaro is able to determine which DNA words are most likely associated with vector sequence. For a description of Figaro's algorithms please see our paper. You may download Figaro individually, or as part of the AMOS package at SourceForge.
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