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Short description:
Please summarise the application in a few sentences. Avoid links here. MG-RAST is a fully-automated service for annotating metagenome samples providing analysis tools for comparison
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Metagenomics, Phylogenetics, Metabolic reconstruction,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Annotation
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Sanger, 454, Ion Torrent, PacBio, Illumina
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Argonne National Laboratory
== Description == <!-- Describe the application in the space below --> MG-RAST is actively maintained at Argonne National Laboratory outside Chicago. It has over 12,000 users and has been used for over 95,000 metagenomic data sets. MG-RAST provides: * comprehensive normalization of sequences (e.g. identification of errors, bar codes etc) * prediction of features for prokaryotic sequences (protein and rRNA features only) * annotation of sequences (assembled and raw reads, minimum length is 75bp) * their phylogenetic classification, * metabolic reconstructions and * comparison tools * a comprehensive API * data publication <!-- -->
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