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Short description:
Please summarise the application in a few sentences. Avoid links here. Discovering known and novel miRNAs from deep sequencing data
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Regulatory RNA,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Illumina, 454
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Max Delbrück Center, Berlin-Buch
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
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