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Short description:
Please summarise the application in a few sentences. Avoid links here. PRINSEQ is a sequence processing tool that can be used to filter, reformat and trim genomic and metagenomic sequence data. It generates summary statistics of the input in graphical and tabular formats that can be used for quality control steps. PRINSEQ is available as both standalone and web-based versions.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Transcriptomics, Metagenomics, Genomics
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Read pre-processing, Sequence contamination filtering, Sequence trimming,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Sanger, Illumina, 454, Ion Torrent, PacBio
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
San Diego State University, Sourceforge
== Description == <!-- Describe the application in the space below --> Not only sequencing, but also data analysis costs money. Analyzing poor data wastes CPU time and interpreting the results from poor data wastes people time. The quality control step can be easily performed using the summary statistics generated by PRINSEQ and can help to choose parameters for data preprocessing. The filter, trim and reformat options provided by PRINSEQ can ensure that the data used for downstream analysis is not compromised of low-quality sequences or sequence artifacts that might lead to erroneous conclusions. PRINSEQ is free, fast, and does not require you to install any software. [[File:Logo_prinseq.png]] <!-- -->
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