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Short description:
Please summarise the application in a few sentences. Avoid links here. SAMStat is an efficient C program for displaying statistics of large sequence files.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Sequencing quality control
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Illumina, Helicos, 454
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Riken, Japan
== Description == SAMStat is an efficient C program displaying summary statistics of large sequence files. When applied to SAM/BAM files all statistics are reported for unmapped, poorly and accurately mapped reads separately. This allows for identification of a variety of problems, such as remaining linker and adaptor sequences, causing poor mapping. Apart from this SAMStat can be used to verify individual processing steps in large analysis pipelines. <!-- -->
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