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Short description:
Please summarise the application in a few sentences. Avoid links here. Identifies fusion transcripts from paired end RNA-Seq data.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
, RNA-Seq, Gene structure,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Sequence alignment analysis,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Any
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Yale University
== Description == <!-- Describe the application in the space below --> FusionSeq is a modular computational framework that detects fusion transcripts from RNASeq data. It is composed by three main modules: 1) a fusion detection modules, which identifies the potential fusion transcript candidates; 2) a filtration cascade module, which removes artifacts generated by several sources of noise, such as mismapping, random pairing during sample preparation, etc.; 3) a junction-sequence identifier module, which detect the sequence of the junction. Each fusion candidate is also ranked according to several statistic to help prioritize the experimental validation. <!-- -->
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