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Short description:
Please summarise the application in a few sentences. Avoid links here. HiPipe is to make NGS data analysis quick and easy with high performance pipelines and intuitive web GUI.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Genomics
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Read mapping, Variant calling, Workflows
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Sanger, Illumina, 454, ABI SOLiD, Ion Torrent
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Web UI,
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Web application,
Academia Sinica, Taiwan, ROC
== Description == <!-- Describe the application in the space below --> HiPipe (http://hipipe.ncgm.sinica.edu.tw/) project is trying to make NGS bioinformatics analysis quick and easy on web so that a researcher can perform fundamental NGS data analysis without bioinformatics or IT staff support. In fact, it should only take about 10 minutes for a new user to know how to use HiPipe. Not only it is easy to use but also it runs very fast. Powered by many computing cores behind, HiPipe can finish a human exome (100x) in 2 hours or less. Therefore,we expect that HiPipe can greatly reduce turnaround time in NGS analysis and help facilitating genomic research.Analysis on miRNA and transcriptome should be released by the end of 2013. <!-- -->
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