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Short description:
Please summarise the application in a few sentences. Avoid links here. Tools for processing restriction site associated DNA sequencing.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
SNP detection,
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Max Planck Institute,
== Description == <!-- Describe the application in the space below --> Restriction site associated DNA sequencing, or RAD-Seq, is a sequencing strategy in which paired ends are generated in which one end maps to a defined restriction site whereas the other end is generated through random shearing. The restriction site end generates a tag which can be used to cluster the random ends, enabling assembly of those fragments in a targeted manner. If restriction sites are conserved, then RAD-Seq will sample the same regions in multiple individuals. RApiD is a set of tools for working with RAD-Seq data. <!-- -->
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