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Short description:
Please summarise the application in a few sentences. Avoid links here. A tool to visualise and analyse high throughput mapped sequence data
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Genomics, Epigenomics
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Visualisation, Sequence assembly visualisation, Statistical calculation, Sequence alignment visualisation
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Desktop GUI,
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Desktop application,
The Babraham Institute
SeqMonk is designed to be an easy to use application for the analysis of large scale mapped sequence datasets. It allows you to visualise your mapped datasets against an annotated genome with very flexible visualisation options. In addition you can also quantitate your data in a number of different ways, and then filter these results to pull out regions of interest. Finally you can annotate regions of interest and export reports and figures for further analysis. SeqMonk can be used to analyse a wide range of data types, ChIP-seq, Genome Reseqencing, 3/4C, MeDIP, Bisulphite Seq etc.
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