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Short description:
Please summarise the application in a few sentences. Avoid links here. Sequedex classifies short reads for phylogeny and function at high speed
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Metagenomics, phylogenetics, Genomics
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Sequence analysis, Sequence annotation,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Illumina HiSeq, Illumina Solexa, Illumina,
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Los Alamos National Lab
== Description == <!-- Describe the application in the space below --> Sequedex is a signature-based method to classify the function and phylogeny of reads as short as 30 bp. For typical metagenomics applications, it works at ~6Gbp/hr/core, some 250,000 times faster than BLASTX against the NR database. <!-- -->
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