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Short description:
Please summarise the application in a few sentences. Avoid links here. Inference of a population from a set of short reads. The package contains programs that support mapping of reads to a reference genome, correcting sequencing errors by locally clustering reads in small windows of the alignment, reconstructing a minimal set of global haplotypes that explain the reads, and estimating the frequencies of the inferred haplotypes.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Metagenomics
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Haplotype inference, Read mapping,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
454, Illumina,
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
ETH Zurich
== Description == <!-- Describe the application in the space below --> <!-- -->
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