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Short description:
Please summarise the application in a few sentences. Avoid links here. User-friendly software package designed to generate detailed statistics and at-a-glance graphics of sequence data quality both quickly and in an automated fashion. This package contains associated software to trim sequences dynamically using the quality scores of bases within individual reads.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Sequencing quality control, Sequence trimming,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Illumina, 454
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Massey University Palmerston North, New Zealand
== Description == <!-- Describe the application in the space below --> SolexaQA is a Perl-based software package that calculates quality statistics and creates visual representations of data quality from FASTQ files generated by Illumina second-generation sequencing technology ("Solexa"). This package also contains DynamicTrim, which trims each sequence of a FASTQ file individually to the longest contiguous read segment for which the quality score at each base is greater than a user-supplied quality cutoff, and LengthSort, which sorts dynamically trimmed reads into subset files based on a user-defined length cutoff. All three programs can handle paired-end data. 454 support is experimental. <!-- -->
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