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Short description:
Please summarise the application in a few sentences. Avoid links here. Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50β100 nt) and can exploit paired-read information to improve mapping accuracy.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
RNA-Seq alignment
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Read mapping,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
Stanford University
= Limitations = * Minimum read length is 50bp * No color space support
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