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Short description:
Please summarise the application in a few sentences. Avoid links here. TagCleaner can be used to automatically detect and efficiently remove tag sequences (e.g. WTA or MID tags) from metagenomic datasets. TagCleaner is available as both standalone and web-based versions.
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Transcriptomics, Metagenomics
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Sequence trimming,
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Sanger, Illumina, 454, Ion Torrent, PacBio
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
San Diego State University, Sourceforge,
== Description == <!-- Describe the application in the space below --> Sequencing metagenomes that were pre-amplified with primer-based methods requires the removal of the additional tag sequences that can contain deletions or insertions due to sequencing limitations. The tag (e.g. WTA primer) sequence may be unavailable or incorrectly reported in public databases. Because of the potential for downstream inaccuracies introduced by unwanted sequence contaminations, it is important to use reliable tools for pre-processing sequence data. [[File:Logo_tagcleaner.png]] <!-- -->
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