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Short description:
Please summarise the application in a few sentences. Avoid links here. TiMAT2 contains tools for genomic tiling microarray analysis
Software version:
Biological application domain(s) (Phylogenetics, Genomics, ...):
Principal bioinformatics method(s) (Assembly, Mapping, ...):
Genotyping
Technology (Sanger, Illumina, 454, SOLiD, Ion Torrent, ...):
Interface (Command line, Web UI, Desktop GUI, SOAP WS, HTTP WS, API, QL):
Resource type (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, Web API, Web service, SPARQL endpoint):
T2 (aka TiMAT2) is a collection of software tools used for for both low and high level tiling microarray data analysis using the Affymetrix, NimbleGen, and Agilent platforms. T2 is a fork of the original TiMAT project at the BDTNP. T2 is designed for processing chIP-chip, RNA difference, and comparative genomic hybridization experiments from both single and multi chip data sets.
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