Difference between revisions of "NarrowPeaks"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Analysis of variation in ChIP-seq using functional PCA | |sw summary=Analysis of variation in ChIP-seq using functional PCA | ||
| − | |bio domain=ChIP-Seq, | + | |bio domain=ChIP-Seq, |
|bio method=Peak calling,Differential Binding | |bio method=Peak calling,Differential Binding | ||
|bio tech=Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina, | |bio tech=Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina, | ||
|created by=Pedro Madrigal, Pawel Krajewski | |created by=Pedro Madrigal, Pawel Krajewski | ||
| − | |created at= | + | |created at=Institute of Plant Genetics PAS, |
|maintained=Yes | |maintained=Yes | ||
| − | |email address= | + | |email address=pm12@sanger.ac.uk |
|input format=WIG, bigWig | |input format=WIG, bigWig | ||
|output format=GRanges, BED | |output format=GRanges, BED | ||
Revision as of 01:55, 4 August 2014
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Application data |
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| Created by | Pedro Madrigal, Pawel Krajewski |
|---|---|
| Biological application domain(s) | ChIP-Seq |
| Principal bioinformatics method(s) | Peak calling, Differential Binding |
| Technology | Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina |
| Created at | Institute of Plant Genetics PAS |
| Maintained? | Yes |
| Input format(s) | WIG, bigWig |
| Output format(s) | GRanges, BED |
| Software features | R/Bioconductor package, can run on major computer platforms |
| Programming language(s) | R |
| Licence | Artistic-2.0 |
| Operating system(s) | Linux, Mac OS X, Windows |
| Contact: | pm12@sanger.ac.uk |
Summary: Analysis of variation in ChIP-seq using functional PCA
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Description
Post-processing of peaks and differential binding in ChIP-seq based on standard wiggle visualization files.
Links
References
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