Difference between revisions of "Post Assembly Genome Improvement Toolkit"
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With the advent of next generation sequencing a lot of effort was put into developing software for mapping or aligning short reads and performing genome assembly. For genome assembly the problem of generating a draft assembly (i.e. a set of unordered contigs) has now been very well addressed - but for users who need high quality assemblies for their analyses there are still unresolved issues: this is where PAGIT is used. " | With the advent of next generation sequencing a lot of effort was put into developing software for mapping or aligning short reads and performing genome assembly. For genome assembly the problem of generating a draft assembly (i.e. a set of unordered contigs) has now been very well addressed - but for users who need high quality assemblies for their analyses there are still unresolved issues: this is where PAGIT is used. " | ||
| − | |bio domain=De novo assembly, | + | |bio domain=De-novo assembly, |
| − | |bio method=De-novo assembly, Quality Control, Assembly quality evaluation, | + | |bio method=De-novo assembly, Quality Control, Assembly quality evaluation, |
|created by=Martin T. Swain, Isheng J. Tsai,1 Samual A. Assefa, Chris Newbold, Matthew Berriman, and Thomas D. Otto | |created by=Martin T. Swain, Isheng J. Tsai,1 Samual A. Assefa, Chris Newbold, Matthew Berriman, and Thomas D. Otto | ||
| − | |created at=Sanger Institute, | + | |created at=Sanger Institute, |
|maintained=Yes | |maintained=Yes | ||
| − | |os=Linux, | + | |os=Linux, |
}} | }} | ||
== Description == | == Description == | ||
Revision as of 15:34, 23 August 2015
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Application data |
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| Created by | Martin T. Swain, Isheng J. Tsai, 1 Samual A. Assefa, Chris Newbold, Matthew Berriman, and Thomas D. Otto |
|---|---|
| Biological application domain(s) | De-novo assembly |
| Principal bioinformatics method(s) | De-novo assembly, Quality Control, Assembly quality evaluation |
| Created at | Sanger Institute |
| Maintained? | Yes |
| Operating system(s) | Linux |
Summary: " Tools to generate automatically high quality sequence by ordering contigs, closing gaps, correcting sequence errors and transferring annotation. With the advent of next generation sequencing a lot of effort was put into developing software for mapping or aligning short reads and performing genome assembly. For genome assembly the problem of generating a draft assembly (i.e. a set of unordered contigs) has now been very well addressed - but for users who need high quality assemblies for their analyses there are still unresolved issues: this is where PAGIT is used. "
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Description
Links
- Post Assembly Genome Improvement Toolkit Homepage [ edit link ]
- Post Assembly Genome Improvement Toolkit Publication full text [ edit link ]
References
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