Difference between revisions of "FusionAnalyser"
(→Description) |
m (remove period from tag) |
||
Line 3: | Line 3: | ||
Tested on Illumina. Requires short, paired-end sequences. | Tested on Illumina. Requires short, paired-end sequences. | ||
|bio domain=High-throughput sequencing | |bio domain=High-throughput sequencing | ||
− | |bio method=Gene fusions discovery | + | |bio method=Gene fusions discovery |
− | |bio tech=Illumina, | + | |bio tech=Illumina, |
|created by=Piazza R | |created by=Piazza R | ||
|created at=University of Milano-Bicocca, Milan, Italy | |created at=University of Milano-Bicocca, Milan, Italy |
Revision as of 17:00, 23 August 2015
Application data |
|
Created by | Piazza R |
---|---|
Biological application domain(s) | High-throughput sequencing |
Principal bioinformatics method(s) | Gene fusions discovery |
Technology | Illumina |
Created at | University of Milano-Bicocca, Milan, Italy |
Maintained? | Yes |
Input format(s) | SAM/BAM |
Output format(s) | Graphical |
Software features | Advanced and user-friendly analysis of RNA-seq data for fusion discovery |
Programming language(s) | C# |
Software libraries | NET framework 4 (Windows) or Mono (Linux) |
Licence | GPLv3 |
Operating system(s) | Windows, Linux |
Summary: FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. Tested on Illumina. Requires short, paired-end sequences.
"Error: no local variable "counter" was set." is not a number.
Description
FusionAnalyser is a new graphical, event-driven tool dedicated to the identification of driver fusion rearrangements in human cancer through the analysis of paired-end high-throughput transcriptome sequencing data. A fully event-driven graphical interface and a flexible filtering system allow complex analyses to be run in the absence of any a priori programming or scripting knowledge. Therefore, we propose FusionAnalyser as an efficient and robust graphical tool for the identification of functional rearrangements in the context of high-throughput transcriptome sequencing data.
FusionAnalyser has been published in: Nucleic Acids Res. 2012 May 8.
It can be downloaded from: http://www.ngsbicocca.org/html/fusionanalyser.html
Links
References
To add a reference for FusionAnalyser, enter the PubMed ID in the field below and click 'Add'.
Search for "FusionAnalyser" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|