Difference between revisions of "MiRDeep"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Discovering known and novel miRNAs from deep sequencing data | |sw summary=Discovering known and novel miRNAs from deep sequencing data | ||
| − | |bio tech= | + | |bio domain=Regulatory RNA, |
| − | |created by= | + | |bio tech=Illumina, 454 |
| + | |created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group | ||
|created at=Max Delbrück Center, Berlin-Buch | |created at=Max Delbrück Center, Berlin-Buch | ||
|maintained=Yes | |maintained=Yes | ||
| + | |language=Perl, | ||
}} | }} | ||
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | ||
| − | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. | + | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. |
| − | + | {{Links}} | |
| − | + | {{References}} | |
| − | + | {{Link box}} | |
Latest revision as of 20:53, 19 December 2015
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Application data |
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| Created by | Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
|---|---|
| Biological application domain(s) | Regulatory RNA |
| Technology | Illumina, 454 |
| Created at | Max Delbrück Center, Berlin-Buch |
| Maintained? | Yes |
| Programming language(s) | Perl |
Summary: Discovering known and novel miRNAs from deep sequencing data
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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
Links
References
To add a reference for MiRDeep, enter the PubMed ID in the field below and click 'Add'.
Search for "MiRDeep" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
