Difference between revisions of "RNA"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A randomized Numerical Aligner for Accurate alignment of NGS reads | |sw summary=A randomized Numerical Aligner for Accurate alignment of NGS reads | ||
− | |bio domain= | + | |bio domain=Mapping, |
− | |bio method=Read mapping, | + | |bio method=Read mapping, |
|bio tech=Illumina, ABI SOLiD, 454 | |bio tech=Illumina, ABI SOLiD, 454 | ||
|created by=Del Fabbro C, Vezzi F, Tomescu AI, Policriti A. | |created by=Del Fabbro C, Vezzi F, Tomescu AI, Policriti A. |
Latest revision as of 22:37, 19 December 2015
Application data |
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Created by | Del Fabbro C, Vezzi F, Tomescu AI, Policriti A. |
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Biological application domain(s) | Mapping |
Principal bioinformatics method(s) | Read mapping |
Technology | Illumina, ABI SOLiD, 454 |
Created at | University of Udine and IGA Institute of Applied Genomics |
Maintained? | Yes |
Input format(s) | (Compressed) FASTA, (Compressed) FASTQ |
Output format(s) | SAM, BAM |
Software features | Fast, Accurate |
Programming language(s) | C++ |
Licence | GPLv3 |
Operating system(s) | Linux, UNIX, Windows, Mac OS X |
Summary: A randomized Numerical Aligner for Accurate alignment of NGS reads
"Error: no local variable "counter" was set." is not a number.
rNA (randomized Numerical Aligner) is a software able to align the huge amount of data produced by Next Generation Sequencers. The main feature of rNA is the fact that it achieves an accuracy greater than the majority of other tools in a feasible amount of time. rNA works with single as well as paired ends reads and it allows indels and delta-search (an alignment option that allows to deal with repetitions) for better accuracy. A graphical user interface is provided for not command-line-skilled users and an MPI-based version for cluster is in development.
Links
References
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