Difference between revisions of "CLCbio Genomics Workbench"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=de novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, browser and other features. Runs on Windows, Mac OS X and Linux. | |sw summary=de novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, browser and other features. Runs on Windows, Mac OS X and Linux. | ||
| − | |bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq, | + | |bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq, |
| + | |bio method=Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation, | ||
| + | |bio tech=454, Solexa, Solid, Helicos, Sanger, | ||
| + | |created by=Thomas Knudsen and Bjarne Knudsen et al | ||
| + | |created at=CLC bio | ||
| + | |maintained=Yes | ||
| + | |input format=FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. | ||
| + | |output format=FASTA, FASTQ, GFF, GenBank, Nexus, and more | ||
| + | |sw feature=Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface | ||
| + | |language=Java and C++ | ||
| + | |licence=Perpetual and temporal | ||
| + | |os=Windows, Mac OS X, Linux, | ||
}} | }} | ||
Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions | Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions | ||
Revision as of 07:18, 13 January 2010
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Application data |
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| Created by | Thomas Knudsen and Bjarne Knudsen et al |
|---|---|
| Biological application domain(s) | Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq |
| Principal bioinformatics method(s) | Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation |
| Technology | 454, Solexa, Solid, Helicos, Sanger |
| Created at | CLC bio |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. |
| Output format(s) | FASTA, FASTQ, GFF, GenBank, Nexus, and more |
| Software features | Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface |
| Programming language(s) | Java and C++ |
| Licence | Perpetual and temporal |
| Operating system(s) | Windows, Mac OS X, Linux |
Summary: de novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, browser and other features. Runs on Windows, Mac OS X and Linux.
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Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions
