Difference between revisions of "CLCbio Genomics Workbench"
Line 11: | Line 11: | ||
|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface | |sw feature=Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface | ||
|language=Java, C++ | |language=Java, C++ | ||
− | |licence=Perpetual | + | |licence=Perpetual, temporal, Free trial license |
|os=Windows, Mac OS X, Linux, | |os=Windows, Mac OS X, Linux, | ||
}} | }} | ||
Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions | Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions |
Revision as of 07:28, 13 January 2010
Application data |
|
Created by | Thomas Knudsen and Bjarne Knudsen et al |
---|---|
Biological application domain(s) | Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, InDel discovery, RNA-Seq |
Principal bioinformatics method(s) | Mapping, Assembly, Alignments, command line tool wrappers, genetic variation annotation, Statistics, Visualisation |
Technology | 454, Solexa, Solid, Helicos, Sanger |
Created at | CLC bio |
Maintained? | Yes |
Input format(s) | FASTA, FASTQ, A reference genome sequence in fasta format, GenBank, SAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD), and many more. |
Output format(s) | FASTA, FASTQ, GFF, GenBank, Nexus, and more |
Software features | Advanced and user-friendly analyses of genomic, transcriptomic and epigenomic NGS data in a graphical user-interface |
Programming language(s) | Java, C++ |
Licence | Perpetual, temporal, Free trial license |
Operating system(s) | Windows, Mac OS X, Linux |
Summary: de novo and reference assembly of Sanger, 454, Solexa, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, browser and other features. Runs on Windows, Mac OS X and Linux.
"Error: no local variable "counter" was set." is not a number.
Link: http://www.clcbio.com/index.php?id=1240 Category: Integrated solutions