Difference between revisions of "BWA"
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{{Bioinformatics application | {{Bioinformatics application | ||
− | |sw summary=Fast, memory | + | |sw summary=Fast, accurate, memory efficient aligner for short and long sequencing reads |
− | |bio method= | + | |bio domain=Read alignment |
+ | |bio method=FM-index | ||
+ | |bio tech=Sanger, Solexa, 454, SOLiD | ||
+ | |created by=Heng Li and Richard Durbin | ||
+ | |created at=Sanger Institute | ||
+ | |maintained=Yes | ||
+ | |input format=compressed/uncompressed fastq/fasta | ||
|output format=SAM | |output format=SAM | ||
+ | |sw feature=Gapped alignment, paired-end mapping | ||
+ | |language=C, | ||
+ | |licence=GPLv3, MIT | ||
+ | |os=Unix | ||
}} | }} |
Revision as of 18:52, 18 February 2010
Application data |
|
Created by | Heng Li and Richard Durbin |
---|---|
Biological application domain(s) | Read alignment |
Principal bioinformatics method(s) | FM-index |
Technology | Sanger, Solexa, 454, SOLiD |
Created at | Sanger Institute |
Maintained? | Yes |
Input format(s) | compressed/uncompressed fastq/fasta |
Output format(s) | SAM |
Software features | Gapped alignment, paired-end mapping |
Programming language(s) | C |
Licence | GPLv3, MIT |
Operating system(s) | Unix |
Summary: Fast, accurate, memory efficient aligner for short and long sequencing reads
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