Difference between revisions of "SOCS"
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{{Bioinformatics application | {{Bioinformatics application | ||
| − | |sw summary= | + | |sw summary=SOLiD reference based, un-gapped alignment with bisulfite tolerance |
| − | |bio method=Mapping, | + | |bio domain=transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery |
| − | |created at=Georgia Institute of Technology | + | |bio method=Mapping, Bisulfite mapping |
| + | |bio tech=SOLiD, | ||
| + | |created by=Brian Ondov | ||
| + | |created at=Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center | ||
| + | |maintained=Maybe | ||
| + | |input format=CSFASTA/CSQUAL (ABI SOLiD), | ||
| + | |output format=Delimited Text, | ||
| + | |sw feature=coverage, colourspace, Bisulfite sequencing, | ||
| + | |language=C++, | ||
| + | |licence=gnu | ||
| + | |os=POSIX | ||
}} | }} | ||
Revision as of 17:06, 16 March 2010
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Application data |
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| Created by | Brian Ondov |
|---|---|
| Biological application domain(s) | transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery |
| Principal bioinformatics method(s) | Mapping, Bisulfite mapping |
| Technology | SOLiD |
| Created at | Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center |
| Maintained? | Maybe |
| Input format(s) | CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | Delimited Text |
| Software features | coverage, colourspace, Bisulfite sequencing |
| Programming language(s) | C++ |
| Licence | gnu |
| Operating system(s) | POSIX |
Summary: SOLiD reference based, un-gapped alignment with bisulfite tolerance
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