Difference between revisions of "BWA"
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|sw summary=Fast, accurate, memory efficient aligner for short and long sequencing reads | |sw summary=Fast, accurate, memory efficient aligner for short and long sequencing reads | ||
|bio domain=Read alignment | |bio domain=Read alignment | ||
| − | |bio method=FM- | + | |bio method=FM-Index |
|bio tech=Sanger, Solexa, 454, SOLiD | |bio tech=Sanger, Solexa, 454, SOLiD | ||
|created by=Heng Li and Richard Durbin | |created by=Heng Li and Richard Durbin | ||
| Line 10: | Line 10: | ||
|output format=SAM | |output format=SAM | ||
|sw feature=Gapped alignment, paired-end mapping | |sw feature=Gapped alignment, paired-end mapping | ||
| − | |language=C, | + | |language=C, |
|licence=GPLv3, MIT | |licence=GPLv3, MIT | ||
|os=Unix | |os=Unix | ||
}} | }} | ||
Revision as of 18:56, 28 April 2010
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Application data |
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| Created by | Heng Li and Richard Durbin |
|---|---|
| Biological application domain(s) | Read alignment |
| Principal bioinformatics method(s) | FM-Index |
| Technology | Sanger, Solexa, 454, SOLiD |
| Created at | Sanger Institute |
| Maintained? | Yes |
| Input format(s) | compressed/uncompressed fastq/fasta |
| Output format(s) | SAM |
| Software features | Gapped alignment, paired-end mapping |
| Programming language(s) | C |
| Licence | GPLv3, MIT |
| Operating system(s) | Unix |
Summary: Fast, accurate, memory efficient aligner for short and long sequencing reads
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