Difference between revisions of "MiRDeep"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Discovering known and novel miRNAs from deep sequencing data | |sw summary=Discovering known and novel miRNAs from deep sequencing data | ||
| − | |bio tech= | + | |bio tech=Solexa/Illumina, 454, deep sequencing data |
|created by=Developed by Marc Friedländer and Nikolaus Rajewsky Systems Biology group | |created by=Developed by Marc Friedländer and Nikolaus Rajewsky Systems Biology group | ||
|created at=Max Delbrück Center, Berlin-Buch | |created at=Max Delbrück Center, Berlin-Buch | ||
Revision as of 20:39, 28 April 2010
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Application data |
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| Created by | Developed by Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
|---|---|
| Technology | Solexa/Illumina, 454, deep sequencing data |
| Created at | Max Delbrück Center, Berlin-Buch |
| Maintained? | Yes |
Summary: Discovering known and novel miRNAs from deep sequencing data
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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
If you use miRDeep in your scientific research, please cite: Friedländer, M.R., Chen, W., Adamidi, C., Maaskola, J., Einspanier, R., Knespel, S., Rajewsky, N. 'Discovering microRNAs from deep sequencing data using miRDeep', Nature Biotechnology, 26, 407-415 (2008)
