Difference between revisions of "SOCS"
Alperyilmaz (talk | contribs) |
|||
| Line 3: | Line 3: | ||
|bio domain=transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery | |bio domain=transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery | ||
|bio method=Mapping, Bisulfite mapping | |bio method=Mapping, Bisulfite mapping | ||
| − | |bio tech=SOLiD, | + | |bio tech=ABI SOLiD, |
|created by=Brian Ondov | |created by=Brian Ondov | ||
|created at=Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center | |created at=Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center | ||
|maintained=Maybe | |maintained=Maybe | ||
| − | |input format=CSFASTA/CSQUAL (ABI SOLiD), | + | |input format=CSFASTA/CSQUAL (ABI SOLiD), |
| − | |output format=Delimited Text, | + | |output format=Delimited Text, |
| − | |sw feature=coverage, colourspace, Bisulfite sequencing, | + | |sw feature=coverage, colourspace, Bisulfite sequencing, |
| − | |language=C++, | + | |language=C++, |
|licence=gnu | |licence=gnu | ||
|os=POSIX | |os=POSIX | ||
}} | }} | ||
Revision as of 20:45, 28 April 2010
|
Application data |
|
| Created by | Brian Ondov |
|---|---|
| Biological application domain(s) | transcriptomics, DNA Methylation, targeted resequencing and transcriptome sequencing, SNP discovery |
| Principal bioinformatics method(s) | Mapping, Bisulfite mapping |
| Technology | ABI SOLiD |
| Created at | Georgia Institute of Technology, National Biodefense Analysis & Countermeasures Center |
| Maintained? | Maybe |
| Input format(s) | CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | Delimited Text |
| Software features | coverage, colourspace, Bisulfite sequencing |
| Programming language(s) | C++ |
| Licence | gnu |
| Operating system(s) | POSIX |
Summary: SOLiD reference based, un-gapped alignment with bisulfite capability
"Error: no local variable "counter" was set." is not a number.
