Difference between revisions of "MiRDeep"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Discovering known and novel miRNAs from deep sequencing data | |sw summary=Discovering known and novel miRNAs from deep sequencing data | ||
+ | |bio domain=miRNA, | ||
|bio tech=Solexa/Illumina, 454, deep sequencing data | |bio tech=Solexa/Illumina, 454, deep sequencing data | ||
− | |created by= | + | |created by=Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
|created at=Max Delbrück Center, Berlin-Buch | |created at=Max Delbrück Center, Berlin-Buch | ||
|maintained=Yes | |maintained=Yes | ||
+ | |language=Perl, | ||
}} | }} | ||
The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data. | ||
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The package is freely available for non-commercial purposes. For commercial purposes, please contact them. | The package is freely available for non-commercial purposes. For commercial purposes, please contact them. | ||
− | + | {{Links}} | |
− | + | {{References}} | |
+ | {{Link box}} |
Revision as of 12:21, 9 June 2010
Application data |
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Created by | Marc Friedländer and Nikolaus Rajewsky Systems Biology group |
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Biological application domain(s) | miRNA |
Technology | Solexa/Illumina, 454, deep sequencing data |
Created at | Max Delbrück Center, Berlin-Buch |
Maintained? | Yes |
Programming language(s) | Perl |
Summary: Discovering known and novel miRNAs from deep sequencing data
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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.
The package is freely available for non-commercial purposes. For commercial purposes, please contact them.
Links
References
To add a reference for MiRDeep, enter the PubMed ID in the field below and click 'Add'.
Search for "MiRDeep" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
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