Difference between revisions of "Ray"
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|sw feature=* MPI 2.2 * ISO/IEC C++ 2003 * de Bruijn * paralleled * Illumina data | |sw feature=* MPI 2.2 * ISO/IEC C++ 2003 * de Bruijn * paralleled * Illumina data | ||
|language=* MPI 2.2 C++ | |language=* MPI 2.2 C++ | ||
| − | |licence=GNU | + | |licence=GNU GPL, |
|os=All POSIX (Linux/BSD/UNIX-like OSes), Linux | |os=All POSIX (Linux/BSD/UNIX-like OSes), Linux | ||
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Revision as of 11:04, 5 September 2011
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Application data |
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| Created by | Sébastien Boisvert, François Laviolette & Jacques Corbeil. |
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| Biological application domain(s) | genomics |
| Principal bioinformatics method(s) | de novo assembly with MPI |
| Technology | Illumina, 454 |
| Created at | Université Laval, Québec, Canada |
| Maintained? | Yes |
| Input format(s) | paired, paired interleaved, single reads: .fasta .fasta.gz .fasta.bz2 .fastq .fastq.gz .fastq.bz2 .sff |
| Output format(s) | .fasta, .txt |
| Software features |
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| Programming language(s) |
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| Licence | GNU GPL |
| Operating system(s) | All POSIX (Linux/BSD/UNIX-like OSes), Linux |
Summary: de novo genome assembly is now a challenge because of the overwhelming amount of data produced by sequencers. Ray assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2 -- a message passing inferface standard. 200px|right
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Parallel de novo genome assemblies of next-gen sequencing data
Links
References
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