SeqSolve

Application data
Created by	Integromics R&D
Biological application domain(s)	RNA-seq ChIP-seq Transcriptome sequencing miRNAProperty "Biological domain" (as page type) with input value "RNA-seq ChIP-seq Transcriptome sequencing miRNA" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., ncRNAs and sRNA study Differential Gene Expression Alternative Splicing analysis New gene discoveryProperty "Biological domain" (as page type) with input value "ncRNAs and sRNA study Differential Gene Expression Alternative Splicing analysis New gene discovery" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Principal bioinformatics method(s)	SAMtools Cufflinks IGV MACS Tibco SpotfireProperty "Bioinformatics method" (as page type) with input value "SAMtools Cufflinks IGV MACS Tibco Spotfire" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Technology	Illumina, Life Technologies, Roche, GA, HiSeq, SOLiD, 454, MiSeq, Ion Torrent, PGM, Helicos
Created at	www.integromics.com
Maintained?	Yes
Input format(s)	SAM, BAM, BED, GTF, GFF, TXT
Output format(s)	JPG, PPT, PDF, BED, XLS, TXT, etc
Software features	User-friendly, Scientifically relevant, Reliable, Scalable
Licence	Commercial
Operating system(s)	Windows, Windows + Linux (server)

Summary: SeqSolve™ is an advanced and user-friendly software solution for the tertiary analysis of Next Generation Sequencing data. By integrating state-of-the-art bioinformatics methods into one-click analysis workflows, SeqSolve provides scientists with a unique combination of cutting edge algorithms and intuitive user experience. Its Click And Go® technology enables the automatic processing of the data and includes a Smart Quality Control system, which makes it both simple to use for non-experts and reliable in terms of biological results. Get the best of your NGS data with SeqSolve!

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Description

Simple analysis. Ultimate Results.

SeqSolve™ from Integromics® is an advanced and user-friendly software solution for the tertiary analysis of Next Generation Sequencing data.

By integrating state-of-the-art bioinformatics methods into one-click analysis workflows, SeqSolve provides scientists with a unique combination of cutting edge algorithms and intuitive user experience. Its Click And Go® technology enables the automatic processing of the data and includes a Smart Quality Control system, which makes it both simple to use for non-experts and reliable in terms of biological results. SeqSolve results are therefore consistent, biologically relevant and reliable.

Starting from mapped reads as an input, SeqSolve performs a large portfolio of RNA-seq or ChIP-seq analyzes on any annotated genome, independently of the sequencing technology. SeqSolve integrates state-of-the-art tools that are widely used by the NGS community and described in the scientific literature, including SAMtools, Cufflinks, MACS and the IGV Genome Browser.

Powered by the industry leading TIBCO® Spotfire® platform, SeqSolve displays scientific visualizations with real-time interactive charts that can be exported and into PowerPoint® or PDF reports in a simple click.

Get the best of your NGS data with SeqSolve, the ultimate NGS data profiler.

Links

• SeqSolve Homepage [ edit link ]

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References

1. . 2010. Nature
2. . 2010. Cell

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