Difference between revisions of "PEMer"
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Revision as of 10:27, 21 September 2009
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Application data |
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| Biological application domain(s) | Structural variants |
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| Created at | European Molecular Biology Laboratory |
| Maintained? | Maybe |
Summary: The package is composed of three modules, PEMer workflow, SV-Simulation and BreakDB. PEMer workflow is a sensitive software for detecting SVs from paired-end sequence reads. SV-Simulation randomly introduces SVs into a given genome and generates simulated paired-end reads from the ‘novel’ genome. Subsequent analysis with PEMer workflow on the simulated reads can facilitate parameterize PEMer workflow. BreakDB is a web accessible database developed to store, annotate and dsplay SV breakpoint events identified by PEMer and from other sources.
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