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{{Bioinformatics application
|sw summary=De novo and reference assembly SNP and small indel detection and annotation.
|bio domain=Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq Alignment, RNA-Seq, miRNA, Alignment, Transcriptomics, |bio method=Mapping, Assembly, Alignment, Colorspace, BLAST, Ab-inito gene prediction, Adapter Removal (software), Annotation, Assembly QC, Basespace, Bisulfite SNP calling, De Bruijn graph, Heatmaps,|bio tech=454, Illumina, ABI SOLiD, Helicos, Sanger, Ion Torrent, paired-end reads,
|created by=Knudsen T, Knudsen B
|created at=http://www.clcbio.com
|maintained=Yes
|input format=FASTA, FASTQ, GenBank, SAM, BAM, Illumina Bustard, ELAND, CSFASTA/CSQUAL (ABI SOLiD)
|output format=FASTA, FASTQ, GFF, GenBank, SAM, BAM, ACE, Nexus, CSV, PDF, XLS,
|sw feature=Advanced and user-friendly analyses of genomic, transcriptomic, and epigenomic NGS data in a graphical user-interface. Wizard driven tools and a freely available developer toolkit, SIMD implementation, multi-threading, hybrid assembly, Integrated solution,
|language=Java, C++
