Difference between revisions of "Methpipe"
| Line 4: | Line 4: | ||
|bio method=Bisulfite mapping, Analysis Pipeline, | |bio method=Bisulfite mapping, Analysis Pipeline, | ||
|bio tech=Illumina, | |bio tech=Illumina, | ||
| − | |created by= | + | |created by=Song Q et al |
|created at=University of Southern California, | |created at=University of Southern California, | ||
|maintained=Yes | |maintained=Yes | ||
Revision as of 22:13, 11 September 2013
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Application data |
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| Created by | Song Q et al |
|---|---|
| Biological application domain(s) | Epigenomics, DNA methylation, Bisulfite Sequencing |
| Principal bioinformatics method(s) | Bisulfite mapping, Analysis Pipeline |
| Technology | Illumina |
| Created at | University of Southern California |
| Maintained? | Yes |
| Input format(s) | FASTQ, SAM/BAM |
| Programming language(s) | C++ |
| Licence | GPL (>= 3) |
| Operating system(s) | Linux, Mac OS X |
| Contact: | methpipe@googlegroups.com |
Summary: The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data (BS-seq, WGBS and RRBS). MethPipe provides tools for mapping bisulfite sequencing read and estimating methylation levels at individual cytosine sites. Additionally, MethPipe includes tools for identifying higher-level methylation features, such as hypo-methylated regions (HMR), partially methylated domains (PMD), hyper-methylated regions (HyperMR), and allele-specific methylated regions (AMR).
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Description
Links
- Methpipe Homepage [ edit link ]
- Methpipe Mailing list [ edit link ]
- Methpipe Manual [ edit link ]
- Methpipe Related [ edit link ]
- Methpipe Related [ edit link ]
- Methpipe Source code [ edit link ]
References
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