Difference between revisions of "NarrowPeaks"
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Revision as of 13:03, 26 October 2013
Application data |
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Created by | Pedro Madrigal, Pawel Krajewski |
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Biological application domain(s) | ChIP-seq |
Principal bioinformatics method(s) | Peak Calling, Differential Binding |
Technology | Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina |
Created at | Wellcome Trust Sanger Institute, Institute of Plant Genetics PAS |
Maintained? | Yes |
Input format(s) | WIG, bigWig |
Output format(s) | GRanges, BED |
Software features | R/Bioconductor package, can run on major computer platforms |
Programming language(s) | R |
Licence | Artistic-2.0 |
Operating system(s) | Linux, Mac OS X, Windows |
Contact: | pm@engineering.com |
Summary: Analysis of Variation in ChIP-seq using Functional PCA
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Description
Post-processing of peaks and differential binding in ChIP-seq based on standard wiggle visualization files.
Links
References
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