Difference between revisions of "Nexalign"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Nexalign is a program to align millions of short reads from next-generation sequencing data sets to reference genomes | |sw summary=Nexalign is a program to align millions of short reads from next-generation sequencing data sets to reference genomes | ||
− | |bio method= | + | |bio method=Read mapping, |
− | |bio tech=454, SOLiD, Illumina, | + | |bio tech=454, ABI SOLiD, Illumina, |
− | |created by=Timo Lassmann, | + | |created by=Timo Lassmann, |
− | |created at=RIKEN Yokohama Institute, | + | |created at=RIKEN Yokohama Institute, |
|maintained=No | |maintained=No | ||
− | |input format=FASTA, | + | |input format=FASTA, |
− | |output format=BED, GFF, TXT, | + | |output format=BED, GFF, TXT, |
− | |language=C++, R, | + | |language=C++, R, |
|licence=GPL, | |licence=GPL, | ||
|os=UNIX, | |os=UNIX, |
Latest revision as of 18:43, 5 November 2015
Application data |
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Created by | Timo Lassmann |
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Principal bioinformatics method(s) | Read mapping |
Technology | 454, ABI SOLiD, Illumina |
Created at | RIKEN Yokohama Institute |
Maintained? | No |
Input format(s) | FASTA |
Output format(s) | BED, GFF, TXT |
Programming language(s) | C++, R |
Licence | GPL |
Operating system(s) | UNIX |
Summary: Nexalign is a program to align millions of short reads from next-generation sequencing data sets to reference genomes
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