Difference between revisions of "Repitools"
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|sw summary=Toolbox of procedures to interrogate and visualize epigenomic data. Part of BioConductor | |sw summary=Toolbox of procedures to interrogate and visualize epigenomic data. Part of BioConductor | ||
|bio domain=ChIP-seq, ChIP-on-chip, | |bio domain=ChIP-seq, ChIP-on-chip, | ||
| − | |bio method=Sequencing quality control, Visualisation, Methylation calling, Statistical calculation, | + | |bio method=Sequencing quality control, Visualisation, Methylation calling, Statistical calculation, |
| + | |interface=Command line, | ||
| + | |resource type=Command-line tool, | ||
|created by=Statham AL, Strbenac D, Coolen MW, Stirzaker C, Clark SJ, Robinson MD | |created by=Statham AL, Strbenac D, Coolen MW, Stirzaker C, Clark SJ, Robinson MD | ||
|created at=The Garvan Institute of Medical Research, Sydney, Australia | |created at=The Garvan Institute of Medical Research, Sydney, Australia | ||
Latest revision as of 16:46, 4 November 2016
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Application data |
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| Created by | Statham AL, Strbenac D, Coolen MW, Stirzaker C, Clark SJ, Robinson MD |
|---|---|
| Biological application domain(s) | ChIP-seq, ChIP-on-chip |
| Principal bioinformatics method(s) | Sequencing quality control, Visualisation, Methylation calling, Statistical calculation |
| Created at | The Garvan Institute of Medical Research, Sydney, Australia
The Walter and Eliza Hall Institute, Melbourne, Australia |
| Maintained? | Yes |
| Programming language(s) | R |
| Interface type(s) | Command line |
| Resource type(s) | Command-line tool |
| Licence | LGPL |
Summary: Toolbox of procedures to interrogate and visualize epigenomic data. Part of BioConductor
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