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Kmergenie

1 byte added, 17:18, 19 December 2015
m
Text replace - "Genomic Assembly" to "Sequence assembly"
{{Bioinformatics application
|sw summary=KmerGenie estimates the best k-mer length for genome de novo assembly. Given a set of reads, KmerGenie first computes the k-mer abundance histogram for many values of k. Then, for each value of k, it predicts the number of distinct genomic k-mers in the dataset, and returns the k-mer length which maximizes this number. Experiments show that KmerGenie's choices lead to assemblies that are close to the best possible over all k-mer lengths.
|bio domain=Genomic AssemblySequence assembly,
|bio method=Sequence assembly
|bio tech=Illumina