Difference between revisions of "CexoR"
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|created at=Wellcome Trust Sanger Institute | |created at=Wellcome Trust Sanger Institute | ||
|maintained=Yes | |maintained=Yes | ||
| − | |email address= | + | |email address=pm12@sanger.ac.uk |
| − | |input format= | + | |input format=Bam, |
| − | |output format=GRanges, R data.frame | + | |output format=GRanges, R data.frame, BED, |
|sw feature=R/Bioconductor package, can run on major computer platforms | |sw feature=R/Bioconductor package, can run on major computer platforms | ||
|language=R | |language=R | ||
Revision as of 01:50, 4 August 2014
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Application data |
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| Created by | Pedro Madrigal |
|---|---|
| Biological application domain(s) | ChIP-exo |
| Principal bioinformatics method(s) | Peak calling, Peak-pair calling |
| Technology | Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina |
| Created at | Wellcome Trust Sanger Institute |
| Maintained? | Yes |
| Input format(s) | Bam |
| Output format(s) | GRanges, R data.frame, BED |
| Software features | R/Bioconductor package, can run on major computer platforms |
| Programming language(s) | R |
| Licence | GPL-2 + file LICENSE |
| Operating system(s) | Linux, Mac OS X, Windows |
| Contact: | pm12@sanger.ac.uk |
Summary: Strand specific peak-pair calling in ChIP-exo data
"Error: no local variable "counter" was set." is not a number.
Description
An R/Bioconductor package to uncover high-resolution protein-DNA interactions in ChIP-exo biological replicates
Links
References
none specified
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