Difference between revisions of "SHREC"
m (Text replace - "Sequencing Quality Control" to "Sequencing quality control") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=A new algorithm for correcting errors in short-read data that uses a generalized suffix trie on the read data as the underlying data structure | |sw summary=A new algorithm for correcting errors in short-read data that uses a generalized suffix trie on the read data as the underlying data structure | ||
− | |bio method=Sequencing | + | |bio method=Sequencing quality control, Error correction, |
|bio tech=Illumina, | |bio tech=Illumina, | ||
|maintained=Yes | |maintained=Yes |
Revision as of 06:39, 25 August 2015
Application data |
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Principal bioinformatics method(s) | Sequencing quality control, Error correction |
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Technology | Illumina |
Maintained? | Yes |
Input format(s) | FASTA, FASTQ |
Programming language(s) | Java |
Summary: A new algorithm for correcting errors in short-read data that uses a generalized suffix trie on the read data as the underlying data structure
"Error: no local variable "counter" was set." is not a number.
SHREC is a JAVA program to correct sequencing errors in short-read hight-throughput data, such as those generated by the Illumina Genome Analyzer.
Links
References
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