Difference between revisions of "ECHO"
m (Text replace - "SNP discovery" to "SNP detection") |
m (Text replace - "InDel discovery" to "Indel detection") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Reference-free short read error correction from diploid genomes, with explicit modeling of heterozygous sites. | |sw summary=Reference-free short read error correction from diploid genomes, with explicit modeling of heterozygous sites. | ||
| − | |bio domain=SNP detection, | + | |bio domain=SNP detection, Indel detection, |
|bio method=Sequence error correction, | |bio method=Sequence error correction, | ||
|created at=UC Berkeley, | |created at=UC Berkeley, | ||
Latest revision as of 19:49, 19 December 2015
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Application data |
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| Biological application domain(s) | SNP detection, Indel detection |
|---|---|
| Principal bioinformatics method(s) | Sequence error correction |
| Created at | UC Berkeley |
| Maintained? | Maybe |
| Input format(s) | FASTQ |
| Programming language(s) | Python, C++ |
| Licence | BSD |
Summary: Reference-free short read error correction from diploid genomes, with explicit modeling of heterozygous sites.
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Description
ECHO is an error correction algorithm designed for short-reads from next-generation sequencing platforms such as Illumina's Genome Analyzer II. The algorithm uses a Bayesian framework to improve the quality of the reads in a given data set by employing maximum a posteriori estimation.
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References
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