Difference between revisions of "SiLoCo"
m (Text replace - "([= ])Expression profiling," to "$1Gene expression profiling,") |
m (Text replace - "General bioinformatics (pipeline)" to "Workflows") |
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location | |sw summary=Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location | ||
| − | |bio domain= | + | |bio domain=Workflows, |
|bio method=Gene expression profiling, | |bio method=Gene expression profiling, | ||
|bio tech=Illumina, 454 | |bio tech=Illumina, 454 | ||
Latest revision as of 10:43, 11 January 2016
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Application data |
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| Created by | Stocks MB, Mapleson D, Moxon S |
|---|---|
| Biological application domain(s) | Workflows |
| Principal bioinformatics method(s) | Gene expression profiling |
| Technology | Illumina, 454 |
| Created at | University of East Anglia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | CSV, Various image file formats |
| Programming language(s) | Java |
| Licence | Custom Licence |
| Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location
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Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location. Number of samples for analyses is limited only by system memory. After SiLoCo has predicted the locus coordinates users can click and view the locus as it appears on the reference genome.
Links
References
none specified
To add a reference for SiLoCo, enter the PubMed ID in the field below and click 'Add'.
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