Difference between revisions of "SAMtools"
(Brief description from the SAMtools webpage) |
(samtools is written in just C) |
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| Line 3: | Line 3: | ||
|bio domain=SNP discovery, | |bio domain=SNP discovery, | ||
|bio method=Simulation, Programming Library, | |bio method=Simulation, Programming Library, | ||
| + | |maintained=Yes | ||
|input format=SAM, BAM | |input format=SAM, BAM | ||
|output format=SAM, BAM, VCF | |output format=SAM, BAM, VCF | ||
| − | |sw feature=Integrated solution, | + | |sw feature=Integrated solution, API |
| − | |language=C | + | |language=C |
|licence=MIT License | |licence=MIT License | ||
}} | }} | ||
| − | |||
SAM Tools provide various utilities for manipulating alignments in the [[SAM]] format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/ | SAM Tools provide various utilities for manipulating alignments in the [[SAM]] format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/ | ||
Revision as of 15:04, 5 May 2010
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Application data |
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| Biological application domain(s) | SNP discovery |
|---|---|
| Principal bioinformatics method(s) | Simulation, Programming Library |
| Maintained? | Yes |
| Input format(s) | SAM, BAM |
| Output format(s) | SAM, BAM, VCF |
| Software features | Integrated solution, API |
| Programming language(s) | C |
| Licence | MIT License |
Summary: Various utilities for processing alignments in the SAM format, including variant calling and alignment viewing.
"Error: no local variable "counter" was set." is not a number.
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. See http://samtools.sourceforge.net/
