Difference between revisions of "RNA"
| Line 11: | Line 11: | ||
|sw feature=Fast, Accurate | |sw feature=Fast, Accurate | ||
|language=C++ | |language=C++ | ||
| − | |licence=GPL v3, | + | |licence=GPL v3, |
| − | |os=Linux, UNIX, | + | |os=Linux, UNIX, Windows, Mac OS X, |
}} | }} | ||
rNA (randomized Numerical Aligner) is a software able to align the huge amount of data produced by Next Generation Sequencers. The main feature of rNA is the fact that it achieves an accuracy greater than the majority of other tools in a feasible amount of time. rNA works with single as well as paired ends reads and it allows indels and delta-search (an alignment option that allows to deal with repetitions) for better accuracy. A graphical user interface is provided for not command-line-skilled users and an MPI-based version for cluster is in development. | rNA (randomized Numerical Aligner) is a software able to align the huge amount of data produced by Next Generation Sequencers. The main feature of rNA is the fact that it achieves an accuracy greater than the majority of other tools in a feasible amount of time. rNA works with single as well as paired ends reads and it allows indels and delta-search (an alignment option that allows to deal with repetitions) for better accuracy. A graphical user interface is provided for not command-line-skilled users and an MPI-based version for cluster is in development. | ||
Revision as of 11:23, 22 April 2012
|
Application data |
|
| Created by | Del Fabbro C, Vezzi F, Tomescu AI, Policriti A. |
|---|---|
| Biological application domain(s) | Read alignment |
| Principal bioinformatics method(s) | Mapping, Hash Table Based |
| Technology | Illumina, ABI SOLiD, 454 |
| Created at | University of Udine and IGA Institute of Applied Genomics |
| Maintained? | Yes |
| Input format(s) | (Compressed) FASTA, (Compressed) FASTQ |
| Output format(s) | SAM, BAM |
| Software features | Fast, Accurate |
| Programming language(s) | C++ |
| Licence | GPL v3 |
| Operating system(s) | Linux, UNIX, Windows, Mac OS X |
Summary: A randomized Numerical Aligner for Accurate alignment of NGS reads
"Error: no local variable "counter" was set." is not a number.
rNA (randomized Numerical Aligner) is a software able to align the huge amount of data produced by Next Generation Sequencers. The main feature of rNA is the fact that it achieves an accuracy greater than the majority of other tools in a feasible amount of time. rNA works with single as well as paired ends reads and it allows indels and delta-search (an alignment option that allows to deal with repetitions) for better accuracy. A graphical user interface is provided for not command-line-skilled users and an MPI-based version for cluster is in development.
Links
References
none specified
To add a reference for RNA, enter the PubMed ID in the field below and click 'Add'.
Search for "RNA" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
