Difference between revisions of "GBrowse"
| Line 1: | Line 1: | ||
{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Genome Viewer | |sw summary=Genome Viewer | ||
| − | |bio method=Visualization, | + | |bio method=Visualization, |
| − | |bio tech=any, | + | |bio tech=any, |
|maintained=Yes | |maintained=Yes | ||
| − | |sw feature=Genome Viewer, | + | |sw feature=Genome Viewer, |
| − | |language=Perl, | + | |language=Perl, |
| − | |os=Linux, Mac OS X, Windows, | + | |licence=Open source |
| + | |os=Linux, Mac OS X, Windows, | ||
}} | }} | ||
| − | |||
GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Some of its features include: | GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Some of its features include: | ||
| Line 24: | Line 24: | ||
* Third-party feature loading. | * Third-party feature loading. | ||
* Customizable plug-in architecture (e.g. run wp:BLAST|BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features) | * Customizable plug-in architecture (e.g. run wp:BLAST|BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features) | ||
| − | |||
{{Links}} | {{Links}} | ||
{{References}} | {{References}} | ||
{{Link box}} | {{Link box}} | ||
Revision as of 21:38, 6 February 2013
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Application data |
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| Principal bioinformatics method(s) | Visualization |
|---|---|
| Technology | any |
| Maintained? | Yes |
| Software features | Genome Viewer |
| Programming language(s) | Perl |
| Licence | Open source |
| Operating system(s) | Linux, Mac OS X, Windows |
Summary: Genome Viewer
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GBrowse is a combination of database and interactive web pages for manipulating and displaying annotations on genomes. Some of its features include:
- Simultaneous bird's eye and detailed views of the genome.
- Scroll, zoom, center.
- Use a variety of premade glyphs or create your own.
- Attach arbitrary URLs to any annotation.
- Order and appearance of tracks are customizable by administrator and end-user.
- Search by annotation ID, name, or comment.
- Supports third party annotation using GFF formats.
- Settings persist across sessions.
- DNA and GFF dumps.
- Connectivity to different databases, including BioSQL and Chado.
- Multi-language support.
- Third-party feature loading.
- Customizable plug-in architecture (e.g. run wp:BLAST|BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features)
Links
References
To add a reference for GBrowse, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "GBrowse" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
