Difference between revisions of "CexoR"
(Created page with "{{Bioinformatics application |sw summary=Strand specific peak-pair calling in ChIP-exo replicates. |bio domain=ChIP-exo |bio method=Peak calling, Peak-pair calling |bio tech=I...") |
|||
Line 18: | Line 18: | ||
<!-- Describe the application in the space below --> | <!-- Describe the application in the space below --> | ||
− | + | An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates | |
− | |||
<!-- --> | <!-- --> | ||
{{Links}} | {{Links}} | ||
{{References}} | {{References}} | ||
{{Link box}} | {{Link box}} |
Revision as of 13:16, 26 October 2013
Application data |
|
Created by | Pedro Madrigal |
---|---|
Biological application domain(s) | ChIP-exo |
Principal bioinformatics method(s) | Peak calling, Peak-pair calling |
Technology | Illumina HiSeq, 454, ABI SOLiD, Ion Torrent, Illumina Solexa, Illumina |
Created at | Wellcome Trust Sanger Institute |
Maintained? | Yes |
Input format(s) | BAM |
Output format(s) | GRanges, R data.frame |
Software features | R/Bioconductor package, can run on major computer platforms |
Programming language(s) | R |
Licence | GPL-2 + file LICENSE |
Operating system(s) | Linux, Mac OS X, Windows |
Contact: | pm@engineering.com |
Summary: Strand specific peak-pair calling in ChIP-exo replicates.
"Error: no local variable "counter" was set." is not a number.
Description
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Links
References
none specified
To add a reference for CexoR, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "CexoR" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|