GATK

Application data
Created by	Broad Institute
Biological application domain(s)	SNP detection
Principal bioinformatics method(s)	Statistical calculation, Localised reassembly
Maintained?	Yes
Input format(s)	SAM
Output format(s)	VCF
Programming language(s)	Java, Python

Summary: The Genome Analysis Toolkit (GATK) is a structured programming framework designed to enable rapid development of efficient and robust analysis tools for next-generation DNA sequencers. The GATK solves the data management challenge by separating data access patterns from analysis algorithms, using the functional programming philosophy of Map/Reduce

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Links

• GATK Homepage [ edit link ]

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References

1. . 2010. Genome Research

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