MapDamage

Application data
Biological application domain(s)	DNA, Sequencing
Principal bioinformatics method(s)	Sequencing quality control, Statistical calculation
Technology	Illumina
Created at	Centre for GeoGenetics
Maintained?	Yes
Input format(s)	SAM, BAM
Programming language(s)	Python, R
Software libraries	pysam
Operating system(s)	Linux, Mac OS X

Summary: Identifies and quantifies DNA damage patterns in ancient DNA

"Error: no local variable "counter" was set." is not a number.

Description

mapDamage is a program that tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

Links

• MapDamage Homepage [ edit link ]
• MapDamage Source code [ edit link ]
• MapDamage Homepage [ edit link ]

• Add a Link

References

1. . 2011. Bioinformatics
2. . 2013. Bioinformatics (Oxford)

To add a reference for MapDamage, enter the PubMed ID in the field below and click 'Add'.

 

[ edit box ]

Search for "MapDamage" in the SEQanswers forum / BioStar or:

Web Search	Wiki Sites	Scientific
Google. Bioinformatics journals Clusty	WikiPedia MetaBase BioPedia OpenWetWare bifx wiki	PubMed Europe PMC ScientificCommons.org