SeqWords
Application data |
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Created by | Gatherer D, Schattner P, Shivak D, Stajich J |
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Principal bioinformatics method(s) | k-mer counting |
Created at | The BioPerl Foundation |
Maintained? | Maybe |
Input format(s) | FASTA |
Software features | Part of BioPerl |
Programming language(s) | Perl |
Licence | Perl artistic licence |
Summary: SeqWords is a featherweight object for the calculation of n-mer word occurrences in a single sequence.
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Bio::Tools::SeqWords is a featherweight object for the calculation of n-mer word occurrences in a single sequence. It is envisaged that the object will be useful for construction of scripts which use n-mer word tables as the raw material for statistical calculations; for instance, hexamer frequency for the calculation of coding potential, or the calculation of periodicity in repetitive DNA.
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