SiLoCo

Application data
Created by	Stocks MB, Mapleson D, Moxon S
Biological application domain(s)	Workflows
Principal bioinformatics method(s)	Gene expression profiling
Technology	Illumina, 454
Created at	University of East Anglia
Maintained?	Yes
Input format(s)	FASTA, FASTQ
Output format(s)	CSV, Various image file formats
Programming language(s)	Java
Licence	Custom Licence
Operating system(s)	Linux 64, Windows, Mac OS X

Summary: Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location

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Description

Part of the UEA sRNA Workbench freely available at:

http://srna-workbench.cmp.uea.ac.uk

Compares sRNA expression levels in multiple samples by grouping sRNAs into loci based on genomic location. Number of samples for analyses is limited only by system memory. After SiLoCo has predicted the locus coordinates users can click and view the locus as it appears on the reference genome.

Links

• SiLoCo Homepage [ edit link ]
• SiLoCo Manual [ edit link ]

• Add a Link

References

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