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URL	http://www.mdc-berlin.eu/en/research/research teams/systems biology of gene regulatory elements/projects/miRDeep/index.html

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The miRDeep package was developed to discover active known or novel miRNAs from deep sequencing data (Solexa/Illumina, 454, ...). The package consists of everything you need to analyze your own deep sequencing data after removal of ligation adapters: a number of scripts to preprocess the mapped data, and the core miRDeep algorithm that will analyze and score these data.